PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232317.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 640aa    MW: 70002 Da    PI: 6.2454
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232317.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.4e-51281551128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+evdiyk+ePwdL  k ++k++++e+yfFs  d+ky +g r nrat+ gyWkatg+d++v+
  XP_008232317.1  28 LAPGFRFHPTDEELVIYYLKRKVCRKPFKF-NAISEVDIYKSEPWDLAdKsSLKSRDQEYYFFSALDRKYGNGARMNRATNLGYWKATGNDRAVK 121
                     579**************************9.89**************75347888999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++ +vg+kktLvf++grap+g++t+Wvmheyrl
  XP_008232317.1 122 H-NDITVGMKKTLVFHSGRAPDGKRTNWVMHEYRL 155
                     *.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-5826180IPR003441NAC domain
PROSITE profilePS5100555.60628180IPR003441NAC domain
PfamPF023656.1E-2630155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MGREAEQPKA IVLAATAPVT PPPAPTALAP GFRFHPTDEE LVIYYLKRKV CRKPFKFNAI  60
SEVDIYKSEP WDLADKSSLK SRDQEYYFFS ALDRKYGNGA RMNRATNLGY WKATGNDRAV  120
KHNDITVGMK KTLVFHSGRA PDGKRTNWVM HEYRLVDEVF EKAGLGSIQD AFVLCRVFHK  180
SNIGPPNGHR YAPFVEEEWD DDDKLTLVPG QESRNEAVAG RDAFIIGNGH AACNDQNAHA  240
ARSEQNAHAA RSEQSGHAAR REQNGHAACI EGNDHAACNG ENGHGTSVQG NGHGTSVQGN  300
GRGTSVQENG HGTSVQGNGH GTSIKGNGHA TSFEGNDHGA SVKGNGHGTS VKENGHGTSV  360
KENGHFCQRE NGHGTSVKGN GHLTSVEGNG HGIIIGDDHG TTNEGNCLEM VEYGPDMHNA  420
GNNFEQDTQP ISNALVTDGE LPTENENDLP LCKTERMDDY PMTCVVNREE RLDDYPSPGP  480
DDAQPLLSLF NRHPGQLRQY KRRRHNDSNS NHSNASDISS GMTHDPCSST TTTASTEASM  540
TTTTRNFLSA LVEYQLLESL EPKDTTPPPP PEFSAALLHS SVPPSCLKYV ETLQNEIHKI  600
SIERETLKFE MMSAQAMINI LQARIDLLNK ENEDLKRNNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-462018212170NAC domain-containing protein 19
3swm_B2e-462018212170NAC domain-containing protein 19
3swm_C2e-462018212170NAC domain-containing protein 19
3swm_D2e-462018212170NAC domain-containing protein 19
3swp_A2e-462018212170NAC domain-containing protein 19
3swp_B2e-462018212170NAC domain-containing protein 19
3swp_C2e-462018212170NAC domain-containing protein 19
3swp_D2e-462018212170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232317.10.0PREDICTED: uncharacterized protein LOC103331477
TrEMBLM5XMB00.0M5XMB0_PRUPE; Uncharacterized protein
STRINGGLYMA20G33430.11e-102(Glycine max)
STRINGPGSC0003DMT4000797911e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.16e-93NAC domain containing protein 52